diff --git a/internal/api/grpc/instance/converter.go b/internal/api/grpc/instance/converter.go
index a59b674b78..ae98bcfa5e 100644
--- a/internal/api/grpc/instance/converter.go
+++ b/internal/api/grpc/instance/converter.go
@@ -63,6 +63,8 @@ func InstanceQueryToModel(searchQuery *instance_pb.Query) (query.SearchQuery, er
 	switch q := searchQuery.Query.(type) {
 	case *instance_pb.Query_IdQuery:
 		return query.NewInstanceIDsListSearchQuery(q.IdQuery.Ids...)
+	case *instance_pb.Query_DomainQuery:
+		return query.NewInstanceDomainsListSearchQuery(q.DomainQuery.Domains...)
 	default:
 		return nil, errors.ThrowInvalidArgument(nil, "INST-3m0se", "List.Query.Invalid")
 	}
diff --git a/internal/api/grpc/system/instance_integration_test.go b/internal/api/grpc/system/instance_integration_test.go
new file mode 100644
index 0000000000..f874ac79f0
--- /dev/null
+++ b/internal/api/grpc/system/instance_integration_test.go
@@ -0,0 +1,109 @@
+//go:build integration
+
+package system_test
+
+import (
+	"testing"
+
+	"github.com/stretchr/testify/assert"
+	"github.com/stretchr/testify/require"
+	"github.com/zitadel/zitadel/pkg/grpc/instance"
+	"github.com/zitadel/zitadel/pkg/grpc/object"
+	system_pb "github.com/zitadel/zitadel/pkg/grpc/system"
+)
+
+func TestServer_ListInstances(t *testing.T) {
+	domain, instanceID, _ := Tester.UseIsolatedInstance(CTX, SystemCTX)
+
+	tests := []struct {
+		name    string
+		req     *system_pb.ListInstancesRequest
+		want    []*instance.Instance
+		wantErr bool
+	}{
+		{
+			name: "empty query error",
+			req: &system_pb.ListInstancesRequest{
+				Queries: []*instance.Query{{}},
+			},
+			wantErr: true,
+		},
+		{
+			name: "non-existing id",
+			req: &system_pb.ListInstancesRequest{
+				Queries: []*instance.Query{{
+					Query: &instance.Query_IdQuery{
+						IdQuery: &instance.IdsQuery{
+							Ids: []string{"foo"},
+						},
+					},
+				}},
+			},
+			want: []*instance.Instance{},
+		},
+		{
+			name: "get 1 by id",
+			req: &system_pb.ListInstancesRequest{
+				Query: &object.ListQuery{
+					Limit: 1,
+				},
+				Queries: []*instance.Query{{
+					Query: &instance.Query_IdQuery{
+						IdQuery: &instance.IdsQuery{
+							Ids: []string{instanceID},
+						},
+					},
+				}},
+			},
+			want: []*instance.Instance{{
+				Id: instanceID,
+			}},
+		},
+		{
+			name: "non-existing domain",
+			req: &system_pb.ListInstancesRequest{
+				Queries: []*instance.Query{{
+					Query: &instance.Query_DomainQuery{
+						DomainQuery: &instance.DomainsQuery{
+							Domains: []string{"foo"},
+						},
+					},
+				}},
+			},
+			want: []*instance.Instance{},
+		},
+		{
+			name: "get 1 by domain",
+			req: &system_pb.ListInstancesRequest{
+				Query: &object.ListQuery{
+					Limit: 1,
+				},
+				Queries: []*instance.Query{{
+					Query: &instance.Query_DomainQuery{
+						DomainQuery: &instance.DomainsQuery{
+							Domains: []string{domain},
+						},
+					},
+				}},
+			},
+			want: []*instance.Instance{{
+				Id: instanceID,
+			}},
+		},
+	}
+	for _, tt := range tests {
+		t.Run(tt.name, func(t *testing.T) {
+			resp, err := Tester.Client.System.ListInstances(SystemCTX, tt.req)
+			if tt.wantErr {
+				require.Error(t, err)
+				return
+			}
+			require.NoError(t, err)
+			got := resp.GetResult()
+			assert.Len(t, got, len(tt.want))
+			for i := 0; i < len(tt.want); i++ {
+				assert.Equalf(t, tt.want[i].GetId(), got[i].GetId(), "instance[%d] id", i)
+			}
+		})
+	}
+}
diff --git a/internal/query/instance.go b/internal/query/instance.go
index f570f05912..c80ae9085b 100644
--- a/internal/query/instance.go
+++ b/internal/query/instance.go
@@ -150,6 +150,15 @@ func NewInstanceIDsListSearchQuery(ids ...string) (SearchQuery, error) {
 	return NewListQuery(InstanceColumnID, list, ListIn)
 }
 
+func NewInstanceDomainsListSearchQuery(domains ...string) (SearchQuery, error) {
+	list := make([]interface{}, len(domains))
+	for i, value := range domains {
+		list[i] = value
+	}
+
+	return NewListQuery(InstanceDomainDomainCol, list, ListIn)
+}
+
 func (q *InstanceSearchQueries) toQuery(query sq.SelectBuilder) sq.SelectBuilder {
 	query = q.SearchRequest.toQuery(query)
 	for _, q := range q.Queries {
@@ -280,7 +289,8 @@ func prepareInstancesQuery(ctx context.Context, db prepareDatabase) (sq.SelectBu
 	return sq.Select(
 			InstanceColumnID.identifier(),
 			countColumn.identifier(),
-		).From(instanceTable.identifier()),
+		).From(instanceTable.identifier()).
+			LeftJoin(join(InstanceDomainInstanceIDCol, InstanceColumnID)),
 		func(builder sq.SelectBuilder) sq.SelectBuilder {
 			return sq.Select(
 				instanceFilterCountColumn,
diff --git a/internal/query/instance_test.go b/internal/query/instance_test.go
index a14b44df0d..27e206e0ee 100644
--- a/internal/query/instance_test.go
+++ b/internal/query/instance_test.go
@@ -55,7 +55,8 @@ var (
 		` projections.instance_domains.creation_date,` +
 		` projections.instance_domains.change_date, ` +
 		` projections.instance_domains.sequence` +
-		` FROM (SELECT projections.instances.id, COUNT(*) OVER () FROM projections.instances) AS f` +
+		` FROM (SELECT projections.instances.id, COUNT(*) OVER () FROM projections.instances` +
+		` LEFT JOIN projections.instance_domains ON projections.instances.id = projections.instance_domains.instance_id) AS f` +
 		` LEFT JOIN projections.instances ON f.id = projections.instances.id` +
 		` LEFT JOIN projections.instance_domains ON f.id = projections.instance_domains.instance_id` +
 		` AS OF SYSTEM TIME '-1 ms'`
diff --git a/proto/zitadel/instance.proto b/proto/zitadel/instance.proto
index 88b2d269f0..e6fdbd3411 100644
--- a/proto/zitadel/instance.proto
+++ b/proto/zitadel/instance.proto
@@ -71,6 +71,7 @@ message Query {
         option (validate.required) = true;
 
         IdsQuery id_query = 1;
+        DomainsQuery domain_query = 2;
     }
 }
 
@@ -83,6 +84,17 @@ message IdsQuery {
     ];
 }
 
+message DomainsQuery {
+    repeated string domains = 1  [
+        (validate.rules).repeated = {max_items: 20, items: {string: {min_len: 1, max_len: 100}}},
+        (grpc.gateway.protoc_gen_openapiv2.options.openapiv2_field) = {
+            max_items: 20,
+            example: "[\"my-instace.zitadel.cloud\", \"auth.custom.com\"]";
+            description: "Return the instances that have the requested domains";
+        }
+    ];
+}
+
 enum FieldName {
     FIELD_NAME_UNSPECIFIED = 0;
     FIELD_NAME_ID = 1;